GgaALTD0003874-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009681 | BUB3
Description
mitotic checkpoint protein BUB3 [Source:RefSeq peptide;Acc:NP_001006506]
Coordinates
chr6:31024069-31024522:+
Coord C1 exon
chr6:31024069-31024169
Coord A exon
chr6:31024170-31024202
Coord C2 exon
chr6:31024414-31024522
Length
33 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
3' ss Seq
TGTGCCTTCCTCCCGCCCAGACA
3' ss Score
8.14
Exon sequences
Seq C1 exon
CCGGTTTGAACCGACCAATGGGAGAGCGGCGCGAAGCGGAGGGGCGGGGTTGTGCGTACTGTGCCTGCGCGGAGCGGGCGGCCGTTGCGCGCTGTGAGGCG
Seq A exon
GTGAGGTGAGGCCGCGGCGGGCGGAGGGGTGAG
Seq C2 exon
ACAGGACTCTCCGGGACCGGGCTGCCTTCCTCCCCCGCGCTGCTGCGTGAAGAACGTTTCTCCTTGGTGTGGCCTCGAGAGAGGGAAGAAGCCGTGTACTATGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009681-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGCGTACTGTGCCTG
R:
GCCACACCAAGGAGAAACGTT
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]