GgaALTD0003932-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20108933-20109537:+
Coord C1 exon
chr7:20108933-20109033
Coord A exon
chr7:20109034-20109137
Coord C2 exon
chr7:20109469-20109537
Length
104 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTCTTTGATTTTTCTGAAGGCT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GGAACAAGGCCAGGCTTTCTGAAAAACACGTGGGAATTGCATTGAACGTACTATGGCAGTTGCAGAAGAAGAAGCCACTTCTCTTAAGGACTTCTGACTAT
Seq A exon
GTAAGAAATCACTCCCAGTTTCTAACTCTTTGCTTTTTAGCAGAAAACAAAGTAGAACACATGGATAATGAGACAATAGTGGACACTCTGTATAGTGTACTGAG
Seq C2 exon
GCTCAGTGTGGAAAGCCATGATTCACTGGCAGGAGTGCTCGTTACAGAAGCGTGGAAAAGATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGGCCAGGCTTTCTG
R:
CTTTCTAATCTTTTCCACGCTTCTGT
Band lengths:
170-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]