GgaALTD0004380-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000010973 | TRA2A
Description
NA
Coordinates
chr2:31223183-31223906:-
Coord C1 exon
chr2:31223828-31223906
Coord A exon
chr2:31223595-31223827
Coord C2 exon
chr2:31223183-31223316
Length
233 bp
Sequences
Splice sites
5' ss Seq
AATGTATGG
5' ss Score
3.37
3' ss Seq
AATACTGTTCTTTTTGTTAGGAG
3' ss Score
6.11
Exon sequences
Seq C1 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAA
Seq A exon
GTATTAAAGATCAGAAAAATAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATGTTTTTTTAAGGCTATAATGAATTGTTTGAATTGGGGAAGAATACACGAAGTATGAAAAATGAAAAACTCAATGAAGAATGAAGAAAAGTAGAAAGCAAGAGTGAAGTAGAATTAAAAGAATCTGGAAGAATGAATGGGTCCTAGGTTAAGTAAAT
Seq C2 exon
GAGTCTCGCTCCCAGTCAAAATCTCCAGCTGGGAGTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGCAGTCCATCGAGAGCTTCCAAACATTCTGAATCACACTCTAGGTCAAGATCAAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGAAGAAATTGAAGAGTT
R:
TCGATTTTGATCTTGACCTAGAGTGT
Band lengths:
207-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]