GgaALTD0004406-4/4 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011020 | CYC_CHICK
Description
NA
Coordinates
chr2:31694112-31695271:-
Coord C1 exon
chr2:31695171-31695271
Coord A exon
chr2:31695130-31695170
Coord C2 exon
chr2:31694112-31694288
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TGTGTGTGTTCCTGGTCTAGTAC
3' ss Score
7.95
Exon sequences
Seq C1 exon
AGCGACACCGGCTTACATAGGGCGGAGTCCGGCGTGTCCTTGGGCGCAGAAGCCGGACGGTGTGGGGCAGCCGGACTTGTGGTCACCGCCGTGGGCGCATT
Seq A exon
GTAAGCGGAGCGGCCGGCTAAGCAGGTGCGGGCCGCGTCAG
Seq C2 exon
TACTGACAATGGGAGATATTGAGAAGGGCAAGAAGATTTTTGTCCAGAAATGTTCCCAGTGCCATACGGTTGAAAAAGGAGGCAAGCACAAGACTGGACCCAACCTTCATGGCCTGTTTGGACGCAAAACAGGACAAGCTGAGGGCTTCTCTTACACAGATGCCAATAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011020-1-0,2-0,3-0,4-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.222
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0),PF036738=UPF0128=PU(39.5=56.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGGACTTGTGGTCAC
R:
GTTGGGTCCAGTCTTGTGCTT
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]