GgaALTD0004462-2/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr7:23558077-23559030:-
Coord C1 exon
chr7:23558943-23559030
Coord A exon
chr7:23558884-23558942
Coord C2 exon
chr7:23558077-23558177
Length
59 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ATCTTTGTTTCTTCCCGCAGGTG
3' ss Score
13.73
Exon sequences
Seq C1 exon
GCAGCAGACTCCCGGGACTCCCTCTCCATGGCGCTGTATTCCCAGTGCTTCTCGTGGCTCATTAGCAAGATTAATACGAAGATCAAAG
Seq A exon
GCAAGGAAAACTTTAAGTCTGTGGGCATCCTGGATATCTTTGGCTTCGAGAACTTCCAG
Seq C2 exon
GTGAATCGTTTTGAGCAGTTTAACATTAACTATGCAAATGAGAAGCTCCAGGAATATTTCAACAAGCATATCTTCTCCTTGGAGCAGCTGGAGTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172-12-14,13-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTTCTCGTGGCTCATT
R:
TACTCCAGCTGCTCCAAGGAG
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]