GgaALTD0004491-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23595023-23595734:-
Coord C1 exon
chr7:23595673-23595734
Coord A exon
chr7:23595557-23595672
Coord C2 exon
chr7:23595023-23595171
Length
116 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
CATATTGTTCTCTTTCCCAGGAG
3' ss Score
9.51
Exon sequences
Seq C1 exon
GATGACCCTTTGAAGAGGACTGGAATATTTTTTGGAGGTCTGGTTCGGGACATAAAGCGCAG
Seq A exon
GTACCCCAAATACCTCAGTGACATCAGAGACGCCTTGCACAGCCAGTGTCTCGCAGCCGTTCTCTTCATCTACTTTGCTGCTCTCTCTCCTGCCATCACCTTCGGGGGACTCCTAG
Seq C2 exon
GAGAGAAAACTGAGGGTCTCATGGGGGTCTCCGAGCTGATAATCTCCACCTCGGTTTTAGGGATCCTCTTCTCCCTGCTTGGAGCCCAGCCGCTCCTGGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAAGCTTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-18-22,19-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(28.8=65.5)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCCTTTGAAGAGGACTGGA
R:
CTTGTAAAAAGCTTCTTCAAACACCA
Band lengths:
210-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]