GgaALTD0004491-3/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21507257-21508012:-
Coord C1 exon
chr7:21507932-21508012
Coord A exon
chr7:21507907-21507931
Coord C2 exon
chr7:21507257-21507405
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CATATTGTTCTCTTTCCCAGGAG
3' ss Score
9.51
Exon sequences
Seq C1 exon
AGCTGTGTGAAGTGAAGGCTGAGGAAGAAGAGGAGGAAGCTGAGGATGACCCTTTGAAGAGGACTGGAATATTTTTTGGAG
Seq A exon
GTCTGGTTCGGGACATAAAGCGCAG
Seq C2 exon
GAGAGAAAACTGAGGGTCTCATGGGGGTCTCCGAGCTGATAATCTCCACCTCGGTTTTAGGGATCCTCTTCTCCCTGCTTGGAGCCCAGCCGCTCCTGGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAAGCTTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-24-30,25-30,26-30,27-30-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(28.8=76.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGTGAAGTGAAGGCTG
R:
ATTATCAGCTCGGAGACCCCC
Band lengths:
124-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]