GgaALTD0004771-1/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr1:79468293-79469406:-
Coord C1 exon
chr1:79469330-79469406
Coord A exon
NA
Coord C2 exon
chr1:79468293-79468449
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTATGG
5' ss Score
3.37
3' ss Seq
TGATTCTTGTTCACCTGTAGGCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAAT
Seq A exon
NA
Seq C2 exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-24-23,25-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.8=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGTCCTACAGCTCCTT
R:
GATGTACCGTCTTGCTTGTGC
Band lengths:
95-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]