GgaALTD0004784-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56230484-56235023:+
Coord C1 exon
chr4:56230484-56230534
Coord A exon
chr4:56230535-56230543
Coord C2 exon
chr4:56234877-56235023
Length
9 bp
Sequences
Splice sites
5' ss Seq
GCGGTAATT
5' ss Score
6.84
3' ss Seq
GTTCTTTTGTTCTTCTCTAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTTCTCTCATACCATGCTTCTGCTGCTGAGGAGGAATCAAGGGAGCTGCAG
Seq A exon
GTAACAGCG
Seq C2 exon
GCTGCTGTAGTACCATCTGCACAATCTCTCAACCTAACTGACTTCAACTTCAGTGATTTTGAGCTATCAGATTTTGAAACAACACTGTGTACAATTCGAATGTTCACAGACCTCAACCTGGTGCAGAATTTCCAAATGAAACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982-13-21,14-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGCTGAGGAGGAATCA
R:
GCTCAAAATCACTGAAGTTGAAGTCA
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]