GgaALTD0005032-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012538 | E1C6K9_CHICK
Description
NA
Coordinates
chr7:37665555-37666383:-
Coord C1 exon
chr7:37666295-37666383
Coord A exon
chr7:37666220-37666294
Coord C2 exon
chr7:37665555-37665757
Length
75 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTTTTAAAATGAATTTCCAGTTC
3' ss Score
6.01
Exon sequences
Seq C1 exon
TGGTTCGCACAGACAGCCTCAAAGGCCGGAGGGGTCGCTTGCCATCCAAACCGAAGAGCCCCCAGGAGCCCTCTCCCCCCTCTCCCCCG
Seq A exon
GTGAGTCTGATCAGTGCGCTGGTGAGAGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
Seq C2 exon
TTCCAGGCTAACCCCGACTACCAGATGAGCGGGGACGACACTCAGCACATCCAGCAGTTCTACGACCTGCTCACCGGCTCCATGGAGATCATCCGCGGCTGGGCAGAGAAGATCCCCGGCTTCACCGACCTGCCCAAAACCGACCAGGATCTGCTCTTCGAGTCCGCCTTCCTCGAGCTCTTCGTGCTGCGCCTGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012538-2-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(0.5=1.8)
A:
NA
C2:
PF0010425=Hormone_recep=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCACAGACAGCCTCAAAG
R:
GATGATCTCCATGGAGCCGGT
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]