GgaALTD0005140-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65692113-65698497:-
Coord C1 exon
chr2:65698000-65698497
Coord A exon
NA
Coord C2 exon
chr2:65692113-65694779
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTCTTGTTTAAAATTTTAGGCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
ATGAAAGCCACCAAAATTGAACTTCTGGAAGAAGAACTCAGACTTGCCAGGGATTCAAATTCAGAAACAAACAACAAGCATAAATTCCTGGAACAGAATCTGCAGAAGTACCAGATGGACATTTCTCAGCTCAAAGCAAAGCTGATGAGTTTGGAGGAGATGAAAAGACAGGCTGAAATGGATGGAAATTCTGCTAAGCAAAACCTGGACAAATGCTATGCCCAAATAAAGGATCTAAATGACAGAATAACCAGGTTGACTTACGAGACTGAAGATGAGAAAAGGAAAAGGAAGTTGCTGGAGGACAGATATGAGCAACAAAAGAATGACTACGACCAGCTGCAGAAAACAAGACAAAACGAGAAAGACAGCCTTGGCTGGCAGAAGTTAGAATCTGAGAAGGTCATCAAGGAGAAGGAGTACGAGATAGAAAGATTAAGGGTTCTCCTGCAGGATGAAGGCACACGGAAGAGGGAGTATGAAAATGAGCTGGCTAAG
Seq A exon
NA
Seq C2 exon
GCATCCAATAGGATTCAAGAATCCAAAAATCAGTATAATCACATTATGCAAGAAAGAGAAACCTTGCTGATAAAAATGAGTGCTCTGGAGCAAGACAAAGCCAGGCTGCAGAGATTAGAAGAGGAGCTGAACCGTTTGAAAGTTAACCTGGAATCAGAGTCTCGTTTGAAGCAACGCCTGGAAAATGAGAAACAACAAATTCTGAATGACCTCAACCAATGGAAGAGCCAGCACTCCCGGACGGAGGAATCCATAAGGAAGATCCAGTGTGAGAGAGAGAAGAGTGAGAGGGAGAAGAACACCTTGAGGAGTGAGATTGAAAGGCTGCAGATGGAGATTAAAAGGATTGAGGAGAGATACCGGTGCAGACTGGAAGAGACTGCTGTCAAAAACCAGTCAGAGTTGGAGTCTGAACGTCTCAGGCTGCAGAGAGAGATTGAGAAACTTAAACAACGCCCATATGGGTCTCACAGATCTACTCAGACTGAAGAAGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-25-24,26-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.9),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.8),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCAGCTGCAGAAAACAA
R:
TCTCATTTTCCAGGCGTTGCT
Band lengths:
357-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]