GgaALTD0005324-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30306851-30307628:-
Coord C1 exon
chrUn_random:30307511-30307628
Coord A exon
NA
Coord C2 exon
chrUn_random:30306851-30307041
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCT
5' ss Score
2.97
3' ss Seq
ACAAATATCTCCACTTTCAGGCC
3' ss Score
8.18
Exon sequences
Seq C1 exon
GAAGAAGACCCCCCCGATGCCCAACTAATGAGGCTAGATAACATGTTGCTGGCGGAGGGCGTCTCCGGCCCCGAGAAAAGAGGAAGAGGAGCACCGATGGCTGTAGCAGCAACACCAG
Seq A exon
NA
Seq C2 exon
GCCTGCAGCGAGTTCACCACCCACGTCATGAACCTGCTCAGGGAACAGAGCCGGACGAGGCCCATTTCTCCCAAAGAAATCGAGCGGATGGTGAACATCATCCACGGCAAATTCAGCACCATTCAGATGCAGCTGAAGCAGAGCACGTGCGAGGCGGTGATGATCCTCCGCTCACGCTTCCTCGATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-3-3,4-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(41.0=100),PF070286=DUF1319=PU(43.6=50.6),PF040917=Sec15=PU(43.1=34.6)
A:
NA
C2:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(54.3=79.7),PF040917=Sec15=PD(53.8=54.7),PF0004624=Homeobox=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATGCCCAACTAATGAGG
R:
TCAGCTGCATCTGAATGGTGC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]