GgaALTD0005360-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000013515 | SLC4A5
Description
NA
Coordinates
chr22_random:19178-20068:-
Coord C1 exon
chr22_random:19955-20068
Coord A exon
chr22_random:19607-19954
Coord C2 exon
chr22_random:19178-19339
Length
348 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAACTGCTCTCTCCCTCCAGCCC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTCAGGGCCTTCATTGCTGACTTTTCCAATGTCTTCTCCATCCTGCTGTTTTGTGGTGTGGATGCCTGTTTCGGCCTGGACACCCCGAAGCTGCACATCCCCAGTATCATCAAG
Seq A exon
GTTTGGCCGCACCGCTGGGATCTGTGCCTCTCTGCTGCTTCCCCTTCAGCTTCTCAGTGCTTTGGGGGGGACGTGGTGGTCCCCTTCTTCCTTCTGGGGCGAAAAACGCGGTGTCTGAGAGCCTTCTGAAACACTGCTTGGCGTTTCTGGGGGAATATTCTAATTCTGTGACTTTTCTTCCTTCTTTTTCTTTCCTTCCCCTCTCTCTGTTCTTCCCACCTCTCACTCCGGCAGCTCCGTAAGCTCATTAGCGATTTCTCTATCTTTATGTCCATACTAATGTTTGTGGGGCTGGATGTGCTTTTCGGACTGAACACCCCAAAGCTCCAAGTGCCTACTGACTTTAAG
Seq C2 exon
CCCACGCGTGTGGACCGAGGGTGGTTTGTCTTTCCCTTTGGGAAGAACCCATGGTGGGTGTACCTGGCCAGCGCTCTGCCTGCCCTGCTCGTCACCATCCTCATCTTCATGGACCAGCAGATCACAGCCGTCATCGTCAACAGGAAGGAGCACAAGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-20-22,21-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGCCTTCATTGCTGAC
R:
GCTTGTGCTCCTTCCTGTTGA
Band lengths:
271-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]