GgaALTD0005376-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013606 | FGL1
Description
Gallus gallus fibrinogen-like 1 (FGL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001277819]
Coordinates
chr4:62470591-62473754:+
Coord C1 exon
chr4:62470591-62470635
Coord A exon
chr4:62470636-62470771
Coord C2 exon
chr4:62473595-62473754
Length
136 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
ACTGGATGTTTTGTGAACAGACT
3' ss Score
5.19
Exon sequences
Seq C1 exon
GATCTACAGAACTGTTTTCAAGAGCAGATACAACTTCAGGCCCAG
Seq A exon
GTGAGACTTCTGGAACATCGTGTGAAACAGCAGCAGTTAAAAATTATACAGCTTTTAGAGAAGAAAGAGATACAGTACAGAGACAGAGGAGATGAAAACAGTGTCATTGACTTGGGAGGAAAAAGACAGTATTCAG
Seq C2 exon
ACTGTGCAGAAATCTACAATGATGGCCACAAGAAAAGTGGATTTTATAAGATGAAACCTACCCAGAGTCCTAATGAATTCCTGGCCTTCTGTGACATGTCTGAAGGGGGTGGTTGGACTGTTTTTCAGAGACGTTCTGATGGCAGCCAGGATTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606-5-4,6-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(1.3=4.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTACAGAACTGTTTTCAAGAGCA
R:
TTGAAATCCTGGCTGCCATCA
Band lengths:
202-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]