GgaALTD0005387-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000013646 | VPS37A
Description
NA
Coordinates
chr4:64982766-64983697:-
Coord C1 exon
chr4:64983554-64983697
Coord A exon
chr4:64983337-64983553
Coord C2 exon
chr4:64982766-64982871
Length
217 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCCTGTCCCTTGTTTTCCAGCTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGTTGCAGTCCAAGTGCTCTGCAAGCCAGACTTAAAGTAGCTGCTCATGAAGCTGAAGAGGAATCTGACACTATTGCAGAAGACTTCTTGGAAGGCAAAACAGAAATAGATGACTTTCTTAGTAGCTTCATGGAAAAGAGAACG
Seq A exon
GTATATAAAATACAAGTCATTCTAATCTGAGAGTTATACAGAATATAGGTAATAAATTAAGACAGACTTTGAGCAGTGCTATGATTCAGAGGGTGCTTTAGCAAGCTCCAGAAAAAGTTTCAGTCTATTTAAAATAGAATCAGCGTTCTGGATGCATTATATTTAAGGCAAGAATGAAAAGATCTCCACCACTAAACCCCTGACTGTGCTCTTGCAG
Seq C2 exon
CTCTGCCACTGTAGACGAGCCAAAGAAGAAAAACTTCAACAGGCAATATCAATGCACAGCCAATTTCATGCTCCGCTATAGGTAAACTGCTGTTTTAATATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-15-11,16-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(31.3=100)
A:
NA
C2:
PF072008=Mod_r=PD(7.3=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGTCCAAGTGCTCTG
R:
ACAGCAGTTTACCTATAGCGGA
Band lengths:
237-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]