GgaALTD0005407-2/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chrUn_random:29795697-29795894:-
Coord C1 exon
chrUn_random:29795886-29795894
Coord A exon
chrUn_random:29795834-29795885
Coord C2 exon
chrUn_random:29795697-29795766
Length
52 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GATGCTTCCCCTGCCCGCAGGTG
3' ss Score
12.5
Exon sequences
Seq C1 exon
GCGCGCCTG
Seq A exon
GTGTGCGCCGTGCCCGGCACCGACGGCGCCGACACGCACTTTGATGAGCTCC
Seq C2 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-4-8,5-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.0=100)
A:
NA
C2:
PF0140314=Sema=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]