GgaALTD0005840-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102843043-102843675:+
Coord C1 exon
chr2:102843043-102843182
Coord A exon
NA
Coord C2 exon
chr2:102843560-102843675
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTAGCTTTTTCTGTTTTAAGGAA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCCTTCAGTGCTTCATTCTGCCCTCATTCTTCTGGCTGTCGGGATCAGGTGATTGCAGAAAACCAAATTGAGCTTGACATTTCTGAACCTGAAGTCTCTGTTACAGTAATGATACCTGACAGAAGAATGCTGGTTTTG
Seq A exon
NA
Seq C2 exon
GAAAGTGTCTTAGTTGTTCCAGCAGACAGCTACAGTTACAAAATTCTTGACAAAAAGACTGTGGACAAGTCATTTGATTTTATCACCCAATGTGGAGGGAACAGTTTTCACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-33-40,34-40-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACAGAAGAATGCTGGT
R:
TGACTTGTCCACAGTCTTTTTGTCA
Band lengths:
97-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]