GgaALTD0005841-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106344087-106345146:+
Coord C1 exon
chr2:106344087-106344133
Coord A exon
chr2:106344134-106344231
Coord C2 exon
chr2:106345006-106345146
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTCAACCATGCCTTAACAGGAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
ATGCAAACCAGGAATAAGAGGACGACAGTGTGATCGGTGTGCTCCAG
Seq A exon
GTACTTATGATTTCCCGAACTGCATACCATGTAAATGTAACAGAGATGGAACTGAACCAGATGTTTGTGATCCTCAGACAGGAATTTGTCTCTGCAAG
Seq C2 exon
GAGAATGTTGAAGGTGCAGAATGTGATATTTGCCGACCCGGATCATTTTATCTGGACCCTTCTAATCCCAAGGGATGCACCACTTGTTTTTGTTTTGGGGTAACAAGCAGCTGTCGCAGCACAAATCGTCGTCGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-37-37,38-37-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGACGACAGTGTGATCG
R:
TCGACGACGATTTGTGCTGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]