GgaALTD0005847-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000015082 | F1NZS7_CHICK
Description
NA
Coordinates
chrZ:33523752-33524433:-
Coord C1 exon
chrZ:33524333-33524433
Coord A exon
chrZ:33524145-33524332
Coord C2 exon
chrZ:33523752-33523883
Length
188 bp
Sequences
Splice sites
5' ss Seq
TCGGTTATC
5' ss Score
-5.97
3' ss Seq
TTATTTTTTTCTACTGTTAGCTC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGGGGCTCTGGGTTATGGGTCGAGTCGCTCTGTTATGGGACTCCTTACGGCGAGAAAGAGTAGAAGGTTCTTACCGGCGGTAGTGGAGCCCTGGCAAGGAG
Seq A exon
GTAGTGGAGCTGGGCCTGTTCCTGTGGCCTTGTCACTGGGGAAGTGCTAGGCAGCTTTTCCCAAGGTTGCTGGTCTGGCAGTAGCCCTCGGGAAACAGAGGTGGTGATCAAGGCATAGCGTAGCTATTTTGGGCTGCTTGTGTTGTTTCTTCGACATTATACATGGGAGGAAGGGAGTACAGCTTTCG
Seq C2 exon
CTCAACATCTCTTTCCCAGCCACTGGCTGCCAGAAGCTTATTGAAGTGGATGATGAGCGCAAGCTGAGAACATTCTATGAGAAGCGAATGGCCACGGAGGTTGCGGCTGATTCTCTTGGCGAGGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015082-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0109214=Ribosomal_S6e=PU(34.4=97.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGTTATGGGTCGAGTCG
R:
CTTCCACTCCTCGCCAAGAG
Band lengths:
227-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]