GgaALTD0006149-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83547681-83550894:+
Coord C1 exon
chr3:83547681-83547781
Coord A exon
NA
Coord C2 exon
chr3:83550787-83550894
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTACGT
5' ss Score
9.51
3' ss Seq
TTTTGCCCCTACTGCTGCAGATT
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAGCCCCTCAGCACGGCGGGCTCCCGGCTCGGGAGGCGCGGCTGGTGCTGAAGGTTCCCGCTGTCGGGCAGTGCGAGGGGTTCGCCCCCAGGGCCCCAAAC
Seq A exon
NA
Seq C2 exon
ATTCATTCATGTTGTTGTGAGCTGAAAGGGCAGACATGAGGACAGCGCTGTGCTCGGCGGTGGCTGCGCTGTGTGCCGCCGCCCTCCTCTCCTCCATCGAGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGCTGAAGGTTCC
R:
CAGCGCTGTCCTCATGTCTG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]