GgaALTD0006222-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000016054 | F1P0S0_CHICK
Description
NA
Coordinates
chr1:110671055-110709622:-
Coord C1 exon
chr1:110709522-110709622
Coord A exon
NA
Coord C2 exon
chr1:110671055-110671377
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTCTTCCTTCTCTGTTACAGGAA
3' ss Score
12.07
Exon sequences
Seq C1 exon
GAGAGCCCTGTCACAATTCATCAGCCAAAGTTACCCAAACAAGCTAGAGAGGATCTGCCAAAAAATCTAAACAAAGAATGTGCCAAGAGAAAAATCCAGAG
Seq A exon
NA
Seq C2 exon
GAATGACATGCCAAGCTCGAAGTTCATATGTTACAAGTGAGATCCTATGGGGTTATCGTTTCACCCCTGTCCTCACTCTGGAGGATGGATTTTATGAAGTTGACTACAATAGTTTTCATGAAACATATGAGACCAACACCCCAGTTTACAGTGCCAAAGAGCTGGCAGAGATGGCCAGCCGAGCAGAACTGCCCCTGACTTGGTCTGTTTCCAGCAAGCTGGACCAGCATGCTGAGCTGGAAACTGAAGAGGAAGAGAAGAATCAAGAAGACCAAAATGAAAGAAATGGTGATGTGGCAAACCTAGAGAATGAGTCCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016054-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PD(23.5=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCACAATTCATCAGCCA
R:
GAAACAGACCAAGTCAGGGGC
Band lengths:
307-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]