GgaALTD0006279-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148275660-148278615:-
Coord C1 exon
chr2:148277466-148278615
Coord A exon
chr2:148277150-148277465
Coord C2 exon
chr2:148275660-148275892
Length
316 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ATGTCTGATTTTATTTTCAGGCA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AAGTACATGCAGATCTGCAGGAAACTTCTGTTTTTAACAGTTCCATCAACCAAAGTTTCTGCCTGCTTGAGCCAGGAGGTGATATACAGCCGGAAGCACTTGGTGAACAGCTATCGCAAACTGCAGATGAATTGACTATCATGAGTACTAATCCTGTTAACACACCATCTACTTGCGCAGATGAATCAATAGCTGCAGATGTGAACCATAATGATCAGCATAATGGTGACTTAAAAACTAATACCATTCCTTCCTTGGAATGTGAAAATCCTCTGGTAGAGAATGCAAGAGAGACTGTCTGTGAGGCATCAACAGACACAGCAGTCACAAACATTCAATCCTGTGTAATGTCAGATTGCTTTCTACTGAAAAATGGCACCTCTGCTCCTGATGAGTTAAAAGATTCTGCTGCAAATGGAGAGGAATCTAGTCATTGCAGTTCTGTAAATGAACAGGGTGAAGAAACTCAGCTTTTGCTCACTGAGGATGCAAGTTTAAAT
Seq A exon
GTGAGTCAAAACAATGCAGTGACTGAGGATCTTTCAGGTTCTGAAGAGAAAAATCAGTCTGTTGCTTCTAGTGAGTCAGAAACAAGCAATCCGTCAGTTCTGAACTCAACAGGAACAACTGACCCTTTGCTAGCACCAGATGCTAATGCAGCCGTCAGTCCACAGGCAGCTTCTTCTAATGCAGATAAATCAGATAATCGGAGTGGAGCTGTTGCCTTTATGCAGATCTTGGATAGCTTACAGAAGAGACAAATGAACACAGAGTTGTGTGAGAGGATAAGGAAGGTTTATGGAGATTTGGAGTGTGAATATTGTG
Seq C2 exon
GCAAGTTATTTTGGTACCAAGTGCATTATGACATGCATGTTCGAACGCACACTCGAGAACATTTGTATTATTGCTCCCAGTGCAGTTACTCTTCCATCACCAAAAACTGCCTTAAGCGTCACGTCATTCAGAAACACAGCAATATTTTGCTGAAATGTCCTACAGAACATTGTGACTACTCTACTCCAGATAAATACAAGCTCCAGGCACATCTTAAAGTTCACTCTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.335 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF127562=zf-C2H2_2=WD(100=16.1),PF138941=zf-C2H2_4=WD(100=4.9)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=33.3),PF134651=zf-H2C2_2=PU(39.3=14.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGACTGTCTGTGAGGCA
R:
AATGACGTGACGCTTAAGGCA
Band lengths:
342-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]