GgaALTD0006361-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142434129-142436241:+
Coord C1 exon
chr2:142434129-142434260
Coord A exon
chr2:142434261-142434269
Coord C2 exon
chr2:142436112-142436241
Length
9 bp
Sequences
Splice sites
5' ss Seq
ACGGTCTGT
5' ss Score
5.11
3' ss Seq
CTGGCATCCTGACTATCCAGATA
3' ss Score
5.18
Exon sequences
Seq C1 exon
GGAGTCAGAAATCTTGTTATAGATGATGAAACAACCTCAAGTCTGAGGGTGGTGTGGGACATTTCAGATCACAATGCTCAGCAGTTCAGAGTGACCTATCTCACAGCCAAAGGTGACCGTGCCGAGGAAGCG
Seq A exon
GTAAGAACG
Seq C2 exon
ATAATGGTGCCTGGGAGACAGAACACTCTTCTGCTTCAGCCTCTGCTACCCGATACGGAATATAAAGTTACAATTACTCCAATCTATGCTGATGGTGAGGGAGTCAGTGTCTCAGCTCCTGGCAAAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-18-24,19-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(68.3=97.7)
A:
NA
C2:
PF0004116=fn3=PD(41.7=79.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCAGTTCAGAGTGACC
R:
GCAGAGGCTGAAGCAGAAGAG
Band lengths:
103-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]