GgaALTD0006452-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000016642 | F1NFP2_CHICK
Description
NA
Coordinates
chr3:109489279-109490851:+
Coord C1 exon
chr3:109489279-109489379
Coord A exon
NA
Coord C2 exon
chr3:109490604-109490851
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTTTTTGTCTCTTTATAAGGCC
3' ss Score
7.6
Exon sequences
Seq C1 exon
TGGCAAGTGAGCATCCAGAGCAATGGGAGACACATCTGTGGAGGCAGCATAATCAGTGCGTTGTGGATCCTGACTGCGGCCCATTGCTTTGCAGATGGAGT
Seq A exon
NA
Seq C2 exon
GCCACCAGATATTAAGATTGTAATGGGAGCAGTTGACCTTGACTTCCCACTGGAAGTACGTGAACCAAGCAGCTTGATCCTTCATGAAGGCTTTAACAGAATAACCTTGAAGCATGATATTGCTCTGATCATGCTCAACTATCCCATTGAATTCAGCGATGAGAAAATCCCCATCTGCTTTCCCTACATGGATGACATCAGTTCATGGCAACACTGCTGGGTTGCTGGATGGGGAATGATGGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016642-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.7=97.9)
A:
NA
C2:
PF0008921=Trypsin=FE(37.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGCATAATCAGTGCGT
R:
TCCAGTGGGAAGTCAAGGTCA
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]