GgaALTD0006732-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000017378 | CRTAC1
Description
NA
Coordinates
chr6:23699779-23702918:+
Coord C1 exon
chr6:23699779-23699879
Coord A exon
NA
Coord C2 exon
chr6:23702722-23702918
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GGGCTGCAGGTCTGTCCCAGGTG
3' ss Score
1.28
Exon sequences
Seq C1 exon
CGCGGAACCGGGAGGCGGGCGGCAAGCGGCGAGGCGGGCGCTGCGGGATGCGCTCCCCCCGCTACCGCCGCCGCGGGGGCACCGGGCAACCCCCCGCGCCC
Seq A exon
NA
Seq C2 exon
GTGCCCAGGATGCTGGTGCTGTGCCTGCTGTCTCTGGCCTGGCTCAGTGAGGGCTCCCAGCGCAGTGAGCCCATGTTCACCGCCGTCACCCACCGACTGCTCCCGCCTGACTATGACAGCAACCCAACACAGCTCAACTATGGCGTGGCTGTCACCGACCTGGATGCTGACGGCAACTTCGAGATTGTGGTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF135171=VCBS=PU(18.3=19.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]