GgaALTD0006732-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21820230-21823369:+
Coord C1 exon
chr6:21820230-21820330
Coord A exon
chr6:21820331-21820390
Coord C2 exon
chr6:21823173-21823369
Length
60 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
GGGCTGCAGGTCTGTCCCAGGTG
3' ss Score
1.28
Exon sequences
Seq C1 exon
CGCGGAACCGGGAGGCGGGCGGCAAGCGGCGAGGCGGGCGCTGCGGGATGCGCTCCCCCCGCTACCGCCGCCGCGGGGGCACCGGGCAACCCCCCGCGCCC
Seq A exon
GTGAGTAGGGAGAGGGCCCCGCGCCTCCGCCCCGCCGCCAACTTTGCCGGGGAGTCGGGG
Seq C2 exon
GTGCCCAGGATGCTGGTGCTGTGCCTGCTGTCTCTGGCCTGGCTCAGTGAGGGCTCCCAGCGCAGTGAGCCCATGTTCACCGCCGTCACCCACCGACTGCTCCCGCCTGACTATGACAGCAACCCAACACAGCTCAACTATGGCGTGGCTGTCACCGACCTGGATGCTGACGGCAACTTCGAGATTGTGGTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF135171=VCBS=PU(18.3=19.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]