GgaALTD0006919-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2255743-2260841:+
Coord C1 exon
chr14:2255743-2255843
Coord A exon
NA
Coord C2 exon
chr14:2260679-2260841
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
ACACCTTGCCTCTTTTTCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
TGGTTAGAACAGTTAATGATTATCTTCTGGAGCAGCCATTATGTGTAGGAACAAGGAGCTGTGCTGCAAAGGGAAGGTGTGAAACTTGAATGATGGTGCGG
Seq A exon
NA
Seq C2 exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAAGGGAAGGTGTGAA
R:
GTAGTTCACAAGTGCCTCCCG
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]