GgaALTD0006920-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2260679-2262208:+
Coord C1 exon
chr14:2260679-2260746
Coord A exon
chr14:2260747-2260841
Coord C2 exon
chr14:2262059-2262208
Length
95 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTA
5' ss Score
5.07
3' ss Seq
GTGTGGTGCGGCTGTTCCAGGTG
3' ss Score
7.08
Exon sequences
Seq C1 exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGG
Seq A exon
GTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
Seq C2 exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-4-1,5-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAATACGGCCCGGTCTTC
R:
AGCTCCTCACAAACCTTCCCT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]