GgaALTD0007160-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000024350 | F1NKE5_CHICK
Description
NA
Coordinates
chr16:257037-257766:+
Coord C1 exon
chr16:257037-257137
Coord A exon
chr16:257138-257207
Coord C2 exon
chr16:257506-257766
Length
70 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTG
5' ss Score
-1.24
3' ss Seq
GTCGCCGTCTGTCCCCGCAGGGT
3' ss Score
11.85
Exon sequences
Seq C1 exon
AACTTTCGCTTTCACTTTTGACAACCCTCACGAGCGAGATCTGCCTGGCGCCCGGTGACGTCACCCGCGCTCACGGACTCCATTGGCCGGGAGGAGCGGAG
Seq A exon
GTACCATTTATGAAGCTGTGCGGAGCCTGGGGTCTCCGCAGAGCGGAGCGGTGCGATGGGTCCGAGCGAG
Seq C2 exon
GGTTGCACTCCCTGCGCTACTTCCTGACCGGGATTACGAATCCCGGCCCCGGGATGCCGCGGTTCGTGATCGTCGGGTACGTGGACGACAAAATCTTCGGTATCTACGACAGTAAGAGCAGGACTGCACAGCCCATCGTGGAGATGCTGCCGCAGGAGGACCAGGAGCACTGGGCTGTGCAGACCCAGAAGGCCCAGGGCGGTGAGCGGGATTTTGACTGGTTCCTGAGCAGGCTGCCGGAACGCTACAACAAAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024350-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0012913=MHC_I=PU(49.4=98.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGACAACCCTCACGAGCG
R:
ATTTTGTCGTCCACGTACCCG
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]