GgaALTD1000570-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSC8]
Coordinates
chr15:7941377-7945057:-
Coord C1 exon
chr15:7944957-7945057
Coord A exon
chr15:7944954-7944956
Coord C2 exon
chr15:7941377-7941406
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTGGTG
5' ss Score
-16.81
3' ss Seq
CTCCAGGTTCCCTGGTGCAGGCA
3' ss Score
4.61
Exon sequences
Seq C1 exon
TTCACGATTCTCCGGTTCCAAGTCCGGCTCCACAGCCACATTAACCATCACTGGGGTCCGAGCCGAGGACGAGGCTGTCTATTACTGTGGGAGTGCAGACA
Seq A exon
GCA
Seq C2 exon
GCAGCACTGACTCAGCCGGCCTCGGTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005919-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PD(3.8=40.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACAGCCACATTAACCA
R:
CGGCTGAGTCAGTGCTGC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]