GgaALTD1000664-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4661278-4667967:+
Coord C1 exon
chr17:4661278-4661378
Coord A exon
chr17:4661379-4661623
Coord C2 exon
chr17:4667897-4667967
Length
245 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGA
5' ss Score
2.36
3' ss Seq
TTCTTCTCTTCCAATTTCAGGGG
3' ss Score
11.35
Exon sequences
Seq C1 exon
GGATTGCCGCAAAAATTGCCCGAAAGAGACAATGCACTAAACGTGATGGAGCCGGAATCAGAGCCGGTCTCCAGATTCAGAGCTACAGCAGCAGGCAGGGG
Seq A exon
GTGAGTACAAAGTGCTGCTTCTGCCGGCGCTGGGGAAAGGCATCCCGGGTGGGGACGGGGTCCCGGGGGTGCCGGGAGGGTTCCGGAGGGGAGAGCGTGCCTGGAGGGAGCCCCGCACGCTGGGGCGGCTGGGGTTGGGGTGGGGGAAGACATTCCTTCTGCCAGGGGATGATGTGAAAACTCCTGAGCTGGAGAGGAGAATGGGCTGGGAAGCAGGGAGGCCACGCTGGAGCCGGAGCAGGAGG
Seq C2 exon
GGGATTCTGCTTTGTCTGGACTGTGTTGTGTTTTAGCTGGTTCCTGGGATTCACACAGGGAAACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-1-0,2-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCGAAAGAGACAATGCA
R:
TTCAGAGTTTCCCTGTGTGAATCC
Band lengths:
156-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]