GgaALTD1000992-1/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT95]
Coordinates
chr8:25601785-25602576:-
Coord C1 exon
chr8:25602444-25602576
Coord A exon
NA
Coord C2 exon
chr8:25601785-25601972
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TGGCTGCTCTTTCCAAACAGCCC
3' ss Score
9.64
Exon sequences
Seq C1 exon
CCCAACGGGAGAGATTTCTGTGAGGATAACCTGGTGGCGTGCACTCTCGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATCCGCTGGGCCCTGCTGTATATGGCCATATATCCAGAAATTCAAG
Seq A exon
NA
Seq C2 exon
CCCGTGTGCAAGCCGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCATCCCTGGAGGACAGGAGCAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGTACCGAGACAGGCGGTGAAGGACACAGTCTTGGCTGGTTTCCGGGTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911-9-16,10-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTACAACCATCCGCTG
R:
TGCCCAATGACAGCATCGATC
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]