GgaALTD1001054-1/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75735464-75736213:-
Coord C1 exon
chr1:75736094-75736213
Coord A exon
NA
Coord C2 exon
chr1:75735464-75735578
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGCAGGT
5' ss Score
0.17
3' ss Seq
CTCTCCAAACCCTTACTTAGGCA
3' ss Score
4.39
Exon sequences
Seq C1 exon
TTACACGTATGGGAAACCAGTCCCTGGTTTGGTGAGTGTCCAAGTGTGCCGGAAATTTTCTCATTCTGCTTCACATTGTTATGGAGAAGAAGGAGAAGCTGTGTGTGAAGAATTCACTAG
Seq A exon
NA
Seq C2 exon
GCAGATGCTCATGGGTGTGTTTCTGCTGTGGTAAGGACCAAAATATTTCAGCTCCGGCGCAGGGGATATGAGATGAGCATTGAGGTGAAAGGCAAGATCACAGAAGATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-10-7,11-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAAGTGTGCCGGAAATT
R:
AACACACCCATGAGCATCTGC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]