GgaALTD1001055-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75743183-75747131:-
Coord C1 exon
chr1:75746951-75747131
Coord A exon
chr1:75746596-75746950
Coord C2 exon
chr1:75743183-75743339
Length
355 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCATTTATTTTTTTCCTCAGCTT
3' ss Score
8.66
Exon sequences
Seq C1 exon
GCAGTACATGGTGCTTCTGCCCTTTCTGATACATACTGGTTCTCCTGAGAAAATCTGTGTTCAGCTGACACACCTGAATGAGTCTGTGACACTGAGTGCTACACTTGAGTATCAAGGGGAAAACAGGAGCTTGATTGATGTGGTGACAGAGAAGGATGTGTTTACCTGCATCCCTTACTCT
Seq A exon
GTGAGTAATCTAATCCCTGTGGGCATATCTCTTGTGTTTATTGCTAAAACGCAGGAGAACTAAACAAAGATGTTGCAATCAGAGGCTTCTAAGCTGAGCCAAACAGCAATAACAACAAAAGATTTTGTGGAAAACTGACTGTGCATTCAGGACTTAGGGAATGTTTCATCTTAAAACTTTGACTTTAAAGTAGAACATAGCCCATCTTGGTCTGATCTGCTCAAGACTCAGAGGAAAAAGAATGAACTGGAATGAGAGCTATAGAAGATGGGGAAGTGGAAAATTAAACTGAAGTCCATGGTGTTACCTTATCTCCTTCTGGGGCTTATTCATGTTTCTTGCAGAAGGCTCGTTG
Seq C2 exon
CTTTCAGAATCCAACAGCACATCAGTGGCACTTCTCACTGTGACAGTGAAGGGAGAGACCCTGCAGTTCAGAAGCAGCAAGTCAGTGCTGGTCAAGAATTCTGAGAGTTTGGTCTTTGTCCAGACAGACAAACCTATCTACAAGCCTGGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(17.0=30.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACATGGTGCTTCTGCCC
R:
CTGTCTGTCCAGGCTTGTAGA
Band lengths:
337-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]