GgaALTD1001451-2/3 @ galGal4
Alternative 5'ss
Description
NA
Coordinates
chr1:178345787-178365935:-
Coord C1 exon
chr1:178365835-178365935
Coord A exon
chr1:178365825-178365834
Coord C2 exon
chr1:178345787-178345911
Length
10 bp
Sequences
Splice sites
5' ss Seq
AGAGTGCGT
5' ss Score
3.85
3' ss Seq
TTGTTTTAACCCTGTTTCAGATC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCGGGCCCTCCTCAGCTCGGTTGGCCCGGTTCCTCCTCCCCTTCGTTAGCAGCTGCGCTGAGCCCGGGACTGGACCGAGTTAGAGTTGAGACGCCGGAGGA
Seq A exon
GTAAGGCAGA
Seq C2 exon
ATCACACAGCTTTTGCAGAAGGTAGCAAGTTGATGCAAGAAGAGCAGGCTCCCCACAGGAAGAAAAAATAAAAGGTCTTGGAGCAACTTACTAAGGTAAACAGATTGCAGTGGATTTCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-0-4,1-4,2-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTAGAGTTGAGACGCCG
R:
TTTTCTTCCTGTGGGGAGCCT
Band lengths:
92-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]