GgaALTD1001785-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GM69]
Coordinates
chr25:1749003-1834710:-
Coord C1 exon
chr25:1750420-1834710
Coord A exon
chr25:1750295-1750419
Coord C2 exon
chr25:1749003-1749120
Length
125 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGC
5' ss Score
7.2
3' ss Seq
TGTTGGGGGTCCCTCCGTAGGTA
3' ss Score
8.14
Exon sequences
Seq C1 exon
GATGTACTGAGGGGGTACGGGGGGGCGCTGGGGCCCATCGCGGCTGCGAGAAGGGGGCACGTGGGTGGCTGTAGGGACGTGGGGGTCACGGGGGGGGTACAGGAGCTGCGTGGGGTGGGCGGCCCATGGAAGTGCGGGGTGCCTATAGCGGCAGGGCGGGGAAGGCAGGGGCTGTGCCCCCACCCCACCCCGTTCGGGGCAGCCCATGGGGTGCGCGGTCCCGAGGACACGCGCGACCCCGCGCCCGCGTCCCGTTAGGCCCCGCCCCCCTCCCGGCAGCGCCCGCGGCGACGTCTCTCTCGCGCCCGGCGGCCACGCCCACCCCGCCCAAACCCCGCCCACCCGGCCGGCACGCGCCAGGCCACGCCCACCTCCCGCCGAGCCCCGCCCCCCGCCCCGGGCCCGCCCGGCGGCGTTGGCGGTGACGTCACTGCCGCCCTCTGCGGGGCGCGGGGGGGGCGGCGGCGGCGGCGGCGCTGAGGGCGGAGGGCGGCGGCGGA
Seq A exon
GTGAGTGGGGCCGGGGGGGGGGGGAGGGGGTCCGGGCGGGGGGAGCGGCGCGGCCTCGCGTTCCGTCCGCCATTTTCGCAGCCCCTTCGGCGCCCCCCCCGGGCCCGGAGCTCCGGAAGGCCGCG
Seq C2 exon
GTACGTGGCCACCCCGCTGGCCGGGCTGCTGGGCGTGAAGGAGCGCGTCCGGCTGAGAGCCGCCCCGAACGCAGTGCTGGAGAGGTTCTACGCGGCCACGTCCAGACAGCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025781-6-2,8-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0004624=Homeobox=PU(46.6=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCTCTCTCGCGCCC
R:
CTCCTTCACGCCCAGCAG
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]