GgaALTD1002251-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6330461-6336534:+
Coord C1 exon
chr19:6330461-6333057
Coord A exon
chr19:6333058-6333078
Coord C2 exon
chr19:6336475-6336534
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTGCTGTCTCTCCCCACAGCTG
3' ss Score
13.76
Exon sequences
Seq C1 exon
TGCTCCGGCGCTGTGTCCCCAGCCGTGTCAGGCGGGGCTGCGCAACCCTCCTGAGCAGCACTGCGGGCGGCAGGGCGGGAGTTAACGCGTGGGGGACGCCGGGGGGGCTGTTTTGAGTCACTTCCTCGCAGTGGGAGGGAGGCTTTGGGGCTGCCGAGCCGCTTCTCGCCAGCCTGGCTCACACCCTGAAGATGAGCCCAGCCTGCTGCTGCCCTAGCCGGGCTGTCCCCGGCCACCGCTGAGCTCCGTGCCCCAGCAGCGGGAATGCCAGTGCTATCCTAACCCACCCCCGGGCTGCCCTCGGGTCCTCCGACCTCTCCTCTCGCGTCCCCGGAGCCGAAGCGGTGGTGATGACCGACGTGTTGGTGCAGCCGGACAGTGGCCCCACTCCTGGAGGGGAGCACCTGGAGCCGGGCGCAGAGGAGCCCGATGGCAAACGGCCCCCCACCACCGGCGCCCGCCTGTGGGGCCGGGTGCGCAGCAAGCTGCTGCGACAGAAG
Seq A exon
GTGCGGGGGGACCGGGAGGAG
Seq C2 exon
CTGGACCCACAGGCTGTGCAGACCAAGAACTGGCACATGGACGTGATTGAGATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-26-22,27-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGAGGAGCCCGATGG
R:
GTTCTTGGTCTGCACAGCCTG
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]