GgaALTD1003443-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12577954-12581724:+
Coord C1 exon
chr8:12577954-12578021
Coord A exon
chr8:12578022-12578026
Coord C2 exon
chr8:12581664-12581724
Length
5 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
TTTTATTTCTTGTACACCAGTCT
3' ss Score
4.86
Exon sequences
Seq C1 exon
TATTTCAGACTTCCTTATGGGAGATGTAGACAATGGCTCGTCGCTGGGACTTCCTGTATCTCGGAGAA
Seq A exon
GTCGG
Seq C2 exon
TCTTTTGAGAATCTCTCTGTGGAGTCTGGGGGTTCACTGCATGAAAGGGATGATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-11-12,12-12,13-12-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAGACAATGGCTCGTCGC
R:
CTTTCATGCAGTGAACCCCCA
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]