GgaALTD1004247-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000024372 | BFIV21
Description
MHC BF2 class I precursor [Source:RefSeq peptide;Acc:NP_001026509]
Coordinates
chr16:59835-60600:+
Coord C1 exon
chr16:59835-59910
Coord A exon
NA
Coord C2 exon
chr16:60328-60600
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
CCTGCCCGGCTGTGTTTCAGGGT
3' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTCCATACCCTGCGGTACATCCGTACGGCGATGACGGATCCCGGCCCCGGGCTGCCGTGGTTCGTGGACGTGGG
Seq A exon
NA
Seq C2 exon
GGTCTCACACAGTGCAGTGGATGTCCGGCTGTGACATCCTCGAGGATGGCACCATCCGGGGGTATCATCAGGCAGCCTACGATGGGAGAGACTTCGTTGCCTTCGACAAAGGCACGATGACGTTAACTGCGGCAGTTCCAGAGGCAGTTCCCACCAAGAGGAAATGGGAGGAAGGAGGTTATGCTGAGGGGCTGAAGCAGTACCTGGAGGAAACCTGCGTGGAGTGGCTGCGGAGATATGTGGAATACGGGAAGGCTGAGCTGGGCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024372-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.0=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(49.4=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCGTACGGCGATGAC
R:
TTCAGCCCCTCAGCATAACCT
Band lengths:
256-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]