GgaALTD1005081-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17047928-17055618:+
Coord C1 exon
chr3:17047928-17047997
Coord A exon
chr3:17047998-17048428
Coord C2 exon
chr3:17055500-17055618
Length
431 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGGATTATGTGTGTTTGCAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GAGTTATGTGACAATCCTCAGTTCATAGTCGGAGGAGCTACTCGGACAGATGTTTGCCAAGGAGAGCTGG
Seq A exon
GTAAGTACACTTCTGCATTTTTATTCTTTTTGTTGTTGTTCCAAAACAAGAAGCTTAATTTAAAAATTCCTCATCCCAGTAGGAGTCTCTCCTAAGAGTCAAGGGACACTGAGAAAGTTTTATCCTCTAGCCTAATCATAGAGGATTTTTACTCGGGAGGCTGAGCAAGACCCAGTCCCAGTTTTACACAAAGAAAATAGCTGGTCCCCAAGTGCAGTGGAATTGCCAGGTCACAGCCTGAACCAATGGTTGAGCACCAGGTGAGAAGTCATGCTTAATCCAGGGAGCTCAGGTGCAAGGAATGCACCTGTGTGTTTAGAAGGGGTAGAGCCTGGATCCACCCCTCCTCACCCTCATTTAAGGGTTTTCAGGTAGAGGAGCAGTATCTTTTTGGATGGAGATTGCACTCTCCTTGAGTGTTGTTGGAAAAG
Seq C2 exon
GTGACTGCTGGCTCCTGGCTGCCATTGCATCTCTGACTTTGAATCCAGATGTTCTTCACCAAGTTGTTCCCAAGGCTCAGAGTTTTCAGGAGAACTATGCTGGGATCTTTCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATCCTCAGTTCATAGTCGG
R:
CTGGAAATGAAAGATCCCAGCA
Band lengths:
182-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]