GgaALTD1006231-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45366977-45368208:-
Coord C1 exon
chr2:45368049-45368208
Coord A exon
chr2:45367773-45368048
Coord C2 exon
chr2:45366977-45367068
Length
276 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGC
5' ss Score
5.08
3' ss Seq
CAATTATTTCTGTTTTATAGTAC
3' ss Score
6.42
Exon sequences
Seq C1 exon
AGTGTGATGAAGTATAAGACACACAAACAAACCACGAGATGGATCCAAGTGATCGAGTAGGCTCTAGCTAGAACATGTTACGTCTGCTGTGAAGTGTGCTTCCTCATCAGTGCAAATGATGCAGCATTCCCTGTTTTCTCCCCGCCTGCTTTGTTGACCG
Seq A exon
GTAGCTGTTTGTATTCCTTCTGCAAAGCCAAACACGGTCATCGGTATCTAGGAGATGTTATGCAGTCCCTGTACATCGCAGTTGCAGCCCTCCAGGGGCAGGAGGGAGGGTGGTGCCTGCACGCGAGATGCGCTGCTGGCACAGTGCGGCCATTGCTAGGCGACGCTGCCGCGGATGCTCGCGCCGCGCCGGCTGTAATGGCAGCACTGCAGCTGGGGGAGTTGCACTCTGGGGCTGTGCATCCGCTCTGAGGTACCACTGGGAATCCCATGTCTC
Seq C2 exon
TACATTTGGGAACGCCTTGCTGTTGGTTTTAAACACAAGAATTACCGATCCCGAGAAGGAGTGTGTTTGTGTCTTATTGCAACCTTAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-16-23,17-23,18-23-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF123483=CLASP_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGATGAAGTATAAGACACACA
R:
ATGTTTAAGGTTGCAATAAGACACA
Band lengths:
252-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]