GgaALTD1006294-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1980605-1982111:-
Coord C1 exon
chr10:1982011-1982111
Coord A exon
chr10:1981611-1982010
Coord C2 exon
chr10:1980605-1980818
Length
400 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
GGATCTTGTTTGTGCTGCAGCCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
CAGGAGGCCTGCTGGGGCCCGCGCTGGAAGAGGAAGCGTTCCCGGAGCAGGGCCTACGAGGGCCGCCCGCGCTGCCCGCCCCGCAGGGACCTGCCCAGGAG
Seq A exon
GTCGCGATCCAGGAGGTGAGGGCCGGCAGCGGGGCGGGGGGCTGCGGCTGAGCTGCAGATACGGCGGGGCTCAGCGCCTGTCGAACTGCCGCTGTGTTCCCCCGTCAGCCATCTCCTTCTGAAACGATCGCGGTTCAAAGGCAGTGTTTCTACTGCCCCTGCCCTGCCCGAATAATCGCAAGCACCCGGGCAACACGAGCCGGTGTTCTTTGTGCCATCACTGAATCACACCGTGTCCCGGGTTGGAGCACCGAGTCCGGCTCCGACCGGCTGAAATGCAGGCTTAGCTCTAAGGAAGAAAAATCCAAGGGAAGACCTTTTGGTCCCTCTGTCCTCGGGCTCTGAGCCTCGTATGTGTCCCCTTCGAGTCGCTGTTTCTGAGCCCTGAGGTTTCACAGAG
Seq C2 exon
CCATGACAGGATGCCTTATCACAGGAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-1-0,2-0,3-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGCTGGAAGAGGAAG
R:
GGAGGCACTGCTACAAGACCT
Band lengths:
294-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]