GgaALTD1006806-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003742 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr28:3988766-3990155:+
Coord C1 exon
chr28:3988766-3988844
Coord A exon
chr28:3988845-3988927
Coord C2 exon
chr28:3990013-3990155
Length
83 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGA
5' ss Score
1.74
3' ss Seq
TCTTCATTTTTATTACCTAGGAA
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTTTTCAAAGAGCTCGCAGAGTACGACGTGTCCGATGCCTTTGGAGCTCCGAAGGAGGAAGGGCACTTCTGGTGGCCAG
Seq A exon
GCATGTCCTCACGTCGACGCCGCAGATCTTCTGTCTTTCCCTGGCACTGGGATGTCACCAAGGATGCTCGCTTCGCCTTCACA
Seq C2 exon
GAAACCGGCTTGGTGGTGATGACGGATACAGTCAGCTTAAACCACAGGCAGAATGGAGGCATGTACACGGATGAGGCTGTCCCAGCTTTTCAGCCTCACACCGGGACATTGGTGGCCACAATGCGTTCTAAAATGGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742-12-16,13-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTACGACGTGTCCGATG
R:
CACCAATGTCCCGGTGTGAG
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]