GgaALTD1007310-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006050 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr5:9969953-9972584:-
Coord C1 exon
chr5:9972484-9972584
Coord A exon
NA
Coord C2 exon
chr5:9969953-9970094
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGCAGGT
5' ss Score
0.78
3' ss Seq
TGTTTTTTTTTCCCTTAAAGATT
3' ss Score
9.8
Exon sequences
Seq C1 exon
TTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGG
Seq A exon
NA
Seq C2 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTCTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=15.0)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGGCAACATCCACTCC
R:
ACCTCCCAAATCAAGGCTGAA
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]