GgaALTD1007890-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000166 | DMB2
Description
Major histocompatibility complex class II beta chain BMA2, (similar to HLA class II, D beta chain) precursor [Source:RefSeq peptide;Acc:NP_001128638]
Coordinates
chr16:78224-80168:-
Coord C1 exon
chr16:80068-80168
Coord A exon
chr16:80018-80067
Coord C2 exon
chr16:78224-78505
Length
50 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CCTCTATCCCCCCAATGCAGGTG
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTCCCCCACGCTCATTGTGCCCACACTGTCCCCACAGGTCCCAATTTGTCCCCGGCGATGATGGTGAAGGTGGCAGTGGCGGCCATGGCGCTGACGTTGGG
Seq A exon
GTTGGTGGCACTCAGCGCCGGGGTTTTCAGCTTCTGTCAGCGGCCACGGG
Seq C2 exon
GTGCCTTCATGGTGCATGTGGCCAACTCCTGCCCACTGGCAGCCAATGGCTCTCTGCGCGGCTTCGACCTCACCGTGGCCTTCAACAAGAACCCTCTGGTGTGCTACGACCCCGATGGCCACCTCTTCAACGCCTGCGACTGGGGGCTGCTGCACGGCGTGGCTGGACAGATTGCCATTGCCCTCAACAATGACAGCACCTGGGTGCAGCGTGCAGAGGCACGGAGACGGGCGTGCAGCAAACTGGCTGCACAGTTCTGGGCACAGACGGCGCTGCGCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000166-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGATGGTGAAGGTGGCAG
R:
AGGGTTCTTGTTGAAGGCCAC
Band lengths:
141-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]