GgaALTD1009873-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000026363 | FIGNL1
Description
fidgetin-like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr2:80702708-80706805:-
Coord C1 exon
chr2:80706705-80706805
Coord A exon
chr2:80706505-80706704
Coord C2 exon
chr2:80702708-80704987
Length
200 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGG
5' ss Score
7.63
3' ss Seq
TATTTTTATGTATGTTTCAGTGT
3' ss Score
8.63
Exon sequences
Seq C1 exon
CAGAACGCTGCTATCCGATTGGTAGGGAGGGGCGAGGGGGGCGGGGCTTGCGGCAGAGCGCGCGCGGGATCCACAGGGGTGGCTGTCGGCGGCCGTGGCCG
Seq A exon
GTGGGTGCGCGCGGCGCGGGCTGGGTGCGCGGATGTCTCGCGGCTCGCTGTGCTCCGCTCGCTGGAGCGCTTGGTGACCGTTACGCCCCCTCACCTCAGGAGCGAGGGGTTTGGCGCAGCAGGTTTCGGGGCGTCCCTTCGGCCAGGCGCGGAGAAGCGAGTCCTGGCTGGGCGGGCTTGGCCTGCTGGGAGTGGTGCCG
Seq C2 exon
TGTCAGCGATGGAGGCCCCGACGCATGGCACCGTGCACCTGAGCGACTGGCAGAAAAGTTACTTTGCTATTGCCTCTGGCACCTGCACACCCGGGCAGAAGGCTGATGAGTACCGTGCCAAAATTCTGCGTATTCAGTATGCATGGGCAAACTCTGAGATCTCTCAGGTCTGTGCTGCCAACCTCTTTAAAAAATACGCAGAGAAATACTCTGCAATTATTGACTCTGACAACATAGAGACTGGCTTGAATAACTATGCTGAAAACATTTTGACTTTGGCAAAGTGTCAGCAAAATGACAGTGACAAGTGGCAATCTGCCTTGACAACAGAGAATGTATTTGGATTGAAGTGTGTGCAAGAGAGGATGCAGGCTGGCAAAAAGATCCAGAGCTCTCAGACGGCACCAGCAGATGCCCTTGTACTAGCTGATAAAGGGGTCAGTGCCTCTGCTGCTCCATGCCTTCCTGGGCTCAGTGCTTTCAGCAGCACCGGTGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026363-2-0,3-0,4-0,5-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGCTGCTATCCGATTGG
R:
TTTTAAAGAGGTTGGCAGCACA
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]