GgaALTD1010825-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12519084-12519685:+
Coord C1 exon
chr1:12519084-12519209
Coord A exon
NA
Coord C2 exon
chr1:12519630-12519685
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TTTATTTATTTATAAAACAGACA
3' ss Score
4.36
Exon sequences
Seq C1 exon
ATGCAAAACTCTAAAGGCTTCTGGGAGAAACTCGACTCAAACTTGGAGAGTGTGAAGTATGCAGAGCCACACTTGCATTACCACAATAATGTGCTCAGGAGGGAATGGCGTAATCTCTCAGAAGAG
Seq A exon
NA
Seq C2 exon
ACAGAAGAGAGAAGAGCCACAGCATATTTAAGGAATATATTTGAAAACGCCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-40-34,41-34-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACTCTAAAGGCTTCTGGG
R:
TTCCTTAAATATGCTGTGGCTCT
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]