GgaALTD1012203-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4713767-4716314:-
Coord C1 exon
chr18:4716214-4716314
Coord A exon
chr18:4715774-4716213
Coord C2 exon
chr18:4713767-4713858
Length
440 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CAGCAGCCCATGTGTTGCAGGAC
3' ss Score
3.29
Exon sequences
Seq C1 exon
CCTATTGCTGCTGCTGAAGGAATTCCTTGGCTCGCCGTGCGGGCGCAGCTCTTCGGGTCACGGCGGAGGCTTTGGACGCTGTCAGCCCCGGCGCTGATGAG
Seq A exon
GTTTGTGCAATTAATTCATCCGCGCTCCGGGGCGTTGGGTTTGTTTTTAACTTGGCGGTGCTGATTGACTCGGGGGCGGATGAAGGCGCAGGGCAGGTGGGCTCAGCTGTGCGCGTTTCCCTCTCTCCTTCGGCGGTAGCTGCGTGCTTTCCGCTGCCTTTTTGCTGCAAGCTGCGCTGCTCGTGCCTGGGCAGTTCTGCTGTGCAAAGCGCTTTTCCTTTCCAAAGTTATTTGGTGGAACAAAGCTGCCCGGGGGGGGGCCGTGCCCGTGCCATTGGGACAGCACGCAGCCTGCAGTGCCGCCGCTTTTGGAGACGGTTCCTTCCATGTTTCAAAGGTTACGGGAGGAAAGTCCTCCTGGGGAGGCACAGCTAAGAGCTCCCGGAGGTGATTTTGCAGAGCGGGGTCGCTGGCTGCGAGCCCTGTGAAATGCGGCTCAG
Seq C2 exon
GACGAAGAGGATGGCCGCACTGCCAAGGCTCTGTGTGGGGCTGCTGCTGCTGGCCCTGCTCTGCACCACCACTCTTGGCCAACGGAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATTGCTGCTGCTGAAGGA
R:
TTCTGCTCCGTTGGCCAAGAG
Band lengths:
193-633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]