GgaALTD1012449-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016055 | KCNJ15
Description
potassium channel, inwardly rectifying subfamily J, member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr1:106881944-106907061:+
Coord C1 exon
chr1:106881944-106882044
Coord A exon
NA
Coord C2 exon
chr1:106905163-106907061
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
TTCTTTTCTTTTCTCCATAGGAC
3' ss Score
13.34
Exon sequences
Seq C1 exon
ATTTCAGCTGCATCTGTGGCTGCTACAGCTCAGTGCGTTACAACCCTGGTACGAATGTATTTCAGATGAGTTTCAGCCTCCCTTTTGCCAACAGGAAAATG
Seq A exon
NA
Seq C2 exon
GACTGAAGCAGTGAGGATGGAAGCCACTCAGATTAATATGTCCCGCGTCCCGCTGGTTAACGGAGGCATCAGCACTGCGCTCAAGGCACACAAACCCCGTGTGATGTCCAAAAGTGGTCACAGCAATGTGCGCATAGACAAAGTTGATGGCATTTACCTACTCTACCTTCAAGATTTGTGGACTACAGTTATAGACATGAAGTGGAGGTACAAACTCACCTTATTTGCTGCTACATTTGTTATGACCTGGTTCCTCTTTGGAGTTATCTATTACGCCATTGCATTCCTTCACGGAGACTTAGAAATAAACAAGTTCACCTCAAAGCGGGAGCCATGTGTCAAGAATGTAGATTCTCTTACGGGGGCATTCCTCTTCTCTCTGGAGTCGCAGACAACCATTGGCTATGGATTTCGTTTCATTACAGAGGAGTGTCCACACGCCATTTTCTTGCTCGTGGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016055-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAGCTGCATCTGTGGCT
R:
TTGTCTATGCGCACATTGCTG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]