GgaALTD1012450-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016055 | KCNJ15
Description
potassium channel, inwardly rectifying subfamily J, member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr1:106882509-106907061:+
Coord C1 exon
chr1:106882509-106882609
Coord A exon
NA
Coord C2 exon
chr1:106905163-106907061
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTTTTCTTTTCTCCATAGGAC
3' ss Score
13.34
Exon sequences
Seq C1 exon
CATGCTTTATTGAAAAGACATCCAACCTTTTATAAAAAAGATTGTTTGACTTGTCATGACGATAACATCTAGTAAGGAATCTGAACATTGCTCTTTTACAG
Seq A exon
NA
Seq C2 exon
GACTGAAGCAGTGAGGATGGAAGCCACTCAGATTAATATGTCCCGCGTCCCGCTGGTTAACGGAGGCATCAGCACTGCGCTCAAGGCACACAAACCCCGTGTGATGTCCAAAAGTGGTCACAGCAATGTGCGCATAGACAAAGTTGATGGCATTTACCTACTCTACCTTCAAGATTTGTGGACTACAGTTATAGACATGAAGTGGAGGTACAAACTCACCTTATTTGCTGCTACATTTGTTATGACCTGGTTCCTCTTTGGAGTTATCTATTACGCCATTGCATTCCTTCACGGAGACTTAGAAATAAACAAGTTCACCTCAAAGCGGGAGCCATGTGTCAAGAATGTAGATTCTCTTACGGGGGCATTCCTCTTCTCTCTGGAGTCGCAGACAACCATTGGCTATGGATTTCGTTTCATTACAGAGGAGTGTCCACACGCCATTTTCTTGCTCGTGGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016055-3-0,4-0,5-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTTTGACTTGTCATGACGA
R:
TTGGACATCACACGGGGTTTG
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]